A B C D E F G I L M N P R S T W misc
| add | add a new method to the package |
| add-method | add a new method to the package |
| aoa | Area of Applicability |
| aoa-method | Area of Applicability |
| Arith-methods | Combine (merge) two sdmModels into a single object |
| as.data.frame | Get a data.frame with record id values (rID) |
| as.data.frame-method | Get a data.frame with record id values (rID) |
| background | Generate background (pseudo-absence) records |
| background-method | Generate background (pseudo-absence) records |
| boxplot | boxplot |
| boxplot-method | boxplot |
| calibration | Calibration |
| calibration-method | Calibration |
| characterORmissing-class | sdmModels classes |
| characterORnull-class | sdmModels classes |
| coords | get or set spatial coordinates of species data |
| coords-method | get or set spatial coordinates of species data |
| coords<- | get or set spatial coordinates of species data |
| coords<--method | get or set spatial coordinates of species data |
| CRSorNULL-class | sdmModels classes |
| data.frameORmatrix-class | sdmModels classes |
| data.frameORnull-class | sdmModels classes |
| density | density |
| density-method | density |
| ensemble | Ensemble Forecasting of SDMs |
| ensemble-method | Ensemble Forecasting of SDMs |
| environmentORnull-class | sdmModels classes |
| evaluates | evaluate for accuracy |
| evaluates-method | evaluate for accuracy |
| expressionORnull-class | sdmModels classes |
| featuresFrame-class | featureFrame class |
| formulaORnull-class | sdmModels classes |
| functionORcharacter-class | sdmModels classes |
| functionORnull-class | sdmModels classes |
| getEvaluation | evaluate for accuracy |
| getEvaluation-method | evaluate for accuracy |
| getmethod | add a new method to the package |
| getmethod-method | add a new method to the package |
| getmethodNames | add a new method to the package |
| getmethodNames-method | add a new method to the package |
| getModelId | Get information/modelIDs relevant to fitted models in a sdmModels object |
| getModelId-method | Get information/modelIDs relevant to fitted models in a sdmModels object |
| getModelInfo | Get information/modelIDs relevant to fitted models in a sdmModels object |
| getModelInfo-method | Get information/modelIDs relevant to fitted models in a sdmModels object |
| getModelObject | Get information/modelIDs relevant to fitted models in a sdmModels object |
| getModelObject-method | Get information/modelIDs relevant to fitted models in a sdmModels object |
| getReplication | evaluate for accuracy |
| getReplication-method | evaluate for accuracy |
| getResponseCurve | Generate and plot response curves |
| getResponseCurve-method | Generate and plot response curves |
| getRoc | plot ROC curves |
| getRoc-method | plot ROC curves |
| getThreshold | Identifying/extracting the best threshold to convert probabilities to Presence/Absences |
| getThreshold-method | Identifying/extracting the best threshold to convert probabilities to Presence/Absences |
| getVarImp | variable importance |
| getVarImp-method | variable importance |
| gui | Graphical User Interface |
| gui-method | Graphical User Interface |
| installAll | install all packages that may be required by the package |
| installAll-method | install all packages that may be required by the package |
| integerORnull-class | sdmModels classes |
| listORcharacter-class | sdmModels classes |
| listORnull-class | sdmModels classes |
| matrixORnull-class | sdmModels classes |
| names | Names of species |
| names-method | Names of species |
| names<- | Names of species |
| names<--method | Names of species |
| niche | Generate and plot Ecological Niche |
| niche-method | Generate and plot Ecological Niche |
| nicheSimilarity | Niche Similarity |
| nicheSimilarity-method | Niche Similarity |
| numericORnull-class | sdmModels classes |
| pa | Converting probability of occurrence to Presence-absence |
| pa-method | Converting probability of occurrence to Presence-absence |
| pca | Principle Component Analysis |
| pca-method | Principle Component Analysis |
| plot-method | Generate and plot Ecological Niche |
| plot-method | Generate and plot response curves |
| predict | sdm model prediction |
| predict-method | sdm model prediction |
| princomp-class | Principle Component Analysis |
| rcurve | Generate and plot response curves |
| rcurve-method | Generate and plot response curves |
| read.sdm | read/write sdm* object from/to a file |
| read.sdm-method | read/write sdm* object from/to a file |
| roc | plot ROC curves |
| roc-method | plot ROC curves |
| sdm | Fit and evaluate species distribution models |
| sdm-method | Fit and evaluate species distribution models |
| sdmAdapt | Adapting sdm* objects in the new version |
| sdmAdapt-method | Adapting sdm* objects in the new version |
| sdmCorrelativeMethod-class | sdmCorrelativeMethod class |
| sdmData | creating sdm Data object |
| sdmdata-class | An S4 class representing sdm dataset |
| sdmData-method | creating sdm Data object |
| sdmEvaluate-class | sdmModels classes |
| sdmFormula-class | sdmModels classes |
| sdmModels-class | sdmModels classes |
| sdmSetting | creating sdmSetting object |
| sdmSetting-method | creating sdmSetting object |
| show-method | evaluate for accuracy |
| show-method | sdmModels classes |
| show-method | creating sdmSetting object |
| show-method | An S4 class representing sdm dataset |
| subset | Subset models in a sdmModels object |
| subset-method | Subset models in a sdmModels object |
| threshold | Identifying/extracting the best threshold to convert probabilities to Presence/Absences |
| threshold-method | Identifying/extracting the best threshold to convert probabilities to Presence/Absences |
| write.sdm | read/write sdm* object from/to a file |
| write.sdm-method | read/write sdm* object from/to a file |
| +-method | Combine (merge) two sdmModels into a single object |
| .pcaObject-class | sdmModels classes |
| [-method | Indexing to extract records of a sdmdata object |
| [[-method | Subset models in a sdmModels object |