Last updated on 2025-05-23 04:51:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.4 | 4.64 | 541.70 | 546.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.5 | 3.58 | 418.75 | 422.33 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.5 | 613.29 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.5 | 839.52 | OK | |||
| r-devel-windows-x86_64 | 0.1.5 | 7.00 | 330.00 | 337.00 | OK | |
| r-patched-linux-x86_64 | 0.1.4 | 5.07 | 519.62 | 524.69 | ERROR | |
| r-release-linux-x86_64 | 0.1.4 | 4.71 | 532.34 | 537.05 | OK | |
| r-release-macos-arm64 | 0.1.5 | 114.00 | ERROR | |||
| r-release-macos-x86_64 | 0.1.5 | 260.00 | ERROR | |||
| r-release-windows-x86_64 | 0.1.5 | 12.00 | 346.00 | 358.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.5 | 373.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.1.5 | 262.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.1.4 | 8.00 | 413.00 | 421.00 | OK |
Version: 0.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a01_DatabaseDiagnostics.Rmd’
--- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
Quitting from a02_CodelistDiagnostics.Rmd:78-83 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics:
Names must be unique.
✖ These names are duplicated:
* "codelist_type" at locations 4 and 5.
--- failed re-building ‘a02_CodelistDiagnostics.Rmd’
--- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PhenotypeR.Rcheck/vign_test/PhenotypeR/vignettes/a03_CohortDiagnostics_files/figure-html/unnamed-chunk-5-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26097 bytes
Input file size = 26211 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20271
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20271
Output IDAT size = 20271 bytes (5826 bytes decrease)
Output file size = 20349 bytes (5862 bytes = 22.36% decrease)
--- finished re-building ‘a03_CohortDiagnostics.Rmd’
--- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a04_MatchedDiagnostics.Rmd’
--- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==================================================
downloaded 565.6 MB
--- finished re-building ‘a05_PopulationDiagnostics.Rmd’
SUMMARY: processing the following file failed:
‘a02_CodelistDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a01_PhenotypeDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
======
downloaded 72.8 MB
Quitting from a01_PhenotypeDiagnostics.Rmd:10-20 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(...)
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a01_PhenotypeDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a01_PhenotypeDiagnostics.Rmd’
--- re-building ‘a02_ShinyDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘a02_ShinyDiagnostics.Rmd’
--- re-building ‘a03_DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
======
downloaded 78.7 MB
Quitting from a03_DatabaseDiagnostics.Rmd:10-21 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a03_DatabaseDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a03_DatabaseDiagnostics.Rmd’
--- re-building ‘a04_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=======
downloaded 82.9 MB
Quitting from a04_CodelistDiagnostics.Rmd:11-22 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a04_CodelistDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a04_CodelistDiagnostics.Rmd’
--- re-building ‘a05_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=======
downloaded 86.4 MB
Quitting from a05_CohortDiagnostics.Rmd:17-28 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a05_CohortDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a05_CohortDiagnostics.Rmd’
--- re-building ‘a06_MatchedDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=========
downloaded 107.0 MB
Quitting from a06_MatchedDiagnostics.Rmd:17-28 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a06_MatchedDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a06_MatchedDiagnostics.Rmd’
--- re-building ‘a07_PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=========
downloaded 107.0 MB
Quitting from a07_PopulationDiagnostics.Rmd:10-21 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a07_PopulationDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a07_PopulationDiagnostics.Rmd’
SUMMARY: processing the following files failed:
‘a01_PhenotypeDiagnostics.Rmd’ ‘a03_DatabaseDiagnostics.Rmd’
‘a04_CodelistDiagnostics.Rmd’ ‘a05_CohortDiagnostics.Rmd’
‘a06_MatchedDiagnostics.Rmd’ ‘a07_PopulationDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a01_PhenotypeDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=
downloaded 14.3 MB
Quitting from a01_PhenotypeDiagnostics.Rmd:10-20 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(...)
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a01_PhenotypeDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a01_PhenotypeDiagnostics.Rmd’
--- re-building ‘a02_ShinyDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘a02_ShinyDiagnostics.Rmd’
--- re-building ‘a03_DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=
downloaded 17.7 MB
Quitting from a03_DatabaseDiagnostics.Rmd:10-21 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a03_DatabaseDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a03_DatabaseDiagnostics.Rmd’
--- re-building ‘a04_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=
downloaded 18.9 MB
Quitting from a04_CodelistDiagnostics.Rmd:11-22 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a04_CodelistDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a04_CodelistDiagnostics.Rmd’
--- re-building ‘a05_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=
downloaded 20.5 MB
Quitting from a05_CohortDiagnostics.Rmd:17-28 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a05_CohortDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a05_CohortDiagnostics.Rmd’
--- re-building ‘a06_MatchedDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=
downloaded 20.4 MB
Quitting from a06_MatchedDiagnostics.Rmd:17-28 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a06_MatchedDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a06_MatchedDiagnostics.Rmd’
--- re-building ‘a07_PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
=
downloaded 20.2 MB
Quitting from a07_PopulationDiagnostics.Rmd:10-21 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a07_PopulationDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a07_PopulationDiagnostics.Rmd’
SUMMARY: processing the following files failed:
‘a01_PhenotypeDiagnostics.Rmd’ ‘a03_DatabaseDiagnostics.Rmd’
‘a04_CodelistDiagnostics.Rmd’ ‘a05_CohortDiagnostics.Rmd’
‘a06_MatchedDiagnostics.Rmd’ ‘a07_PopulationDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a01_PhenotypeDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
================
downloaded 191.5 MB
Quitting from a01_PhenotypeDiagnostics.Rmd:10-20 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(...)
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a01_PhenotypeDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a01_PhenotypeDiagnostics.Rmd’
--- re-building ‘a02_ShinyDiagnostics.Rmd’ using rmarkdown
--- finished re-building ‘a02_ShinyDiagnostics.Rmd’
--- re-building ‘a03_DatabaseDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
==============
downloaded 164.2 MB
Quitting from a03_DatabaseDiagnostics.Rmd:10-21 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a03_DatabaseDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a03_DatabaseDiagnostics.Rmd’
--- re-building ‘a04_CodelistDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
===================
downloaded 215.5 MB
Quitting from a04_CodelistDiagnostics.Rmd:11-22 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a04_CodelistDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a04_CodelistDiagnostics.Rmd’
--- re-building ‘a05_CohortDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
===================
downloaded 220.6 MB
Quitting from a05_CohortDiagnostics.Rmd:17-28 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a05_CohortDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a05_CohortDiagnostics.Rmd’
--- re-building ‘a06_MatchedDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
===================
downloaded 220.6 MB
Quitting from a06_MatchedDiagnostics.Rmd:17-28 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a06_MatchedDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a06_MatchedDiagnostics.Rmd’
--- re-building ‘a07_PopulationDiagnostics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip'
Content type 'application/zip' length 593048982 bytes (565.6 MB)
===================
downloaded 220.5 MB
Quitting from a07_PopulationDiagnostics.Rmd:10-21 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
---
Backtrace:
▆
1. └─CDMConnector::downloadEunomiaData(datasetName = "synpuf-1k")
2. ├─withr::with_options(...)
3. │ └─base::force(code)
4. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a07_PopulationDiagnostics.Rmd' failed with diagnostics:
download from 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' failed
--- failed re-building ‘a07_PopulationDiagnostics.Rmd’
SUMMARY: processing the following files failed:
‘a01_PhenotypeDiagnostics.Rmd’ ‘a03_DatabaseDiagnostics.Rmd’
‘a04_CodelistDiagnostics.Rmd’ ‘a05_CohortDiagnostics.Rmd’
‘a06_MatchedDiagnostics.Rmd’ ‘a07_PopulationDiagnostics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
Error in saveRDS(list(base = base, value = ret0), dest) :
error writing to connection
Calls: <Anonymous> -> rownames -> %||% -> <Anonymous> -> saveRDS
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.1.5
Check: PDF version of manual
Result: WARN
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Flavor: r-oldrel-macos-x86_64