Last updated on 2025-10-30 03:51:05 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.9 | 13.37 | 291.43 | 304.80 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.9 | 9.35 | 210.55 | 219.90 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.9 | 92.00 | 391.00 | 483.00 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.9 | 56.00 | 445.21 | 501.21 | NOTE | |
| r-devel-windows-x86_64 | 1.0.9 | 14.00 | 247.00 | 261.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.9 | 12.89 | 229.36 | 242.25 | ERROR | |
| r-release-linux-x86_64 | 1.0.9 | 11.08 | 272.33 | 283.41 | NOTE | |
| r-release-macos-arm64 | 1.0.9 | 5.00 | 120.00 | 125.00 | NOTE | |
| r-release-macos-x86_64 | 1.0.9 | 11.00 | 226.00 | 237.00 | NOTE | |
| r-release-windows-x86_64 | 1.0.9 | 15.00 | 249.00 | 264.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.9 | 6.00 | 108.00 | 114.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.0.9 | 13.00 | 177.00 | 190.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.0.9 | 20.00 | 319.00 | 339.00 | NOTE |
Version: 1.0.9
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [ctb] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [ctb] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.9
Check: Rd files
Result: NOTE
checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces
19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.}
| ^
checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup?
18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.}
| ^
checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup?
30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.9
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘anndata.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘anndata.Rmd’
--- re-building ‘ginhoux.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘ginhoux.Rmd’
--- re-building ‘simulated-data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘simulated-data.Rmd’
--- re-building ‘singlecellexperiment.Rmd’ using rmarkdown
Quitting from singlecellexperiment.Rmd:25-40 [load_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'SingleCellExperiment'
---
Backtrace:
▆
1. └─base::library(SingleCellExperiment)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'singlecellexperiment.Rmd' failed with diagnostics:
there is no package called 'SingleCellExperiment'
--- failed re-building ‘singlecellexperiment.Rmd’
SUMMARY: processing the following file failed:
‘singlecellexperiment.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64