netcutter: Identification and Analysis of Co-Occurrence Networks

Implementation of the NetCutter algorithm described in Müller and Mancuso (2008) <doi:10.1371/journal.pone.0003178>. The package identifies co-occurring terms in a list of containers. For example, it may be used to detect genes that co-occur across genomes.

Version: 0.3.1
Imports: PoissonBinomial, rlecuyer
Suggests: knitr, rmarkdown, qpdf, testthat (≥ 3.0.0)
Published: 2025-05-21
DOI: 10.32614/CRAN.package.netcutter
Author: Heiko Müller [aut], Francesco Mancuso [aut], Federico Marotta [cre]
Maintainer: Federico Marotta <federico.marotta at embl.de>
BugReports: https://github.com/fmarotta/netcutter/issues
License: MIT + file LICENSE
URL: https://doi.org/10.1371/journal.pone.0003178
NeedsCompilation: no
Materials: README NEWS
CRAN checks: netcutter results

Documentation:

Reference manual: netcutter.pdf
Vignettes: netcutter (source, R code)

Downloads:

Package source: netcutter_0.3.1.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available

Linking:

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